清华大学环境学院博士研究生导师简介：周集中

清华大学环境学院博士研究生导师简介：周集中

　　姓　　名：周集中

　　所在单位：生态学教研所

　　职　　称：千人计划

　　邮寄地址：清华大学环境学院

　　办公电话：010-62784692

　　电子邮件：jzzhou@tsinghua.edu.cn

　　办公地点：环境节能楼

　　教育背景

　　1978-1981 中国湖南农业大学植物病理学与昆虫学 学士

　　1982-1984 中国湖南农业大学数学生态学 硕士

　　1989-1993 美国华盛顿州立大学分子生物学 博士

　　工作履历

　　1985-1986 中国 湖南农业大学 讲师

　　1986-1988 中国 中国科学院动物所/生态环境研究中心 助理研究员 (攻读博士学位)

　　1988 加拿大 加拿大卡尔加里大学(University of Calgary, Calgary, Alberta, Canada)访问学者(Visiting Scientist)

　　1993-1995 美国 国家自然科学基金会微生物生态研究中心(NSF Center for Microbial Ecology)博士后(Postdoctoral Research Associate)

　　1996-1997 美国 橡树岭国家实验室(Oak Ridge National Lab)博士后(Alexander Hollaender Distinguished Postdoctoral Fellow)

　　1997-2000 美国 橡树岭国家实验室环境科学部(Environmental Sciences Division, Oak Ridge National Lab)研究员(Staff Scientist)

　　2001-2002 美国 橡树岭国家实验室(Oak Ridge National Lab)高级研究员(Senior Staff Scientist)

　　2000-2004 美国 橡树岭国家实验室(Oak Ridge National Lab)环境基因学科带头人(Science Leader for Environmental Genomics Program)

　　2003-2005 美国 橡树岭国家实验室(Oak Ridge National Lab)资深研究员(Distinguished R&D Staff Scientist)

　　2005-今 美国 俄克拉荷马大学植物学与微生物学系环境基因研究所(Institute for Environmental Genomics, Department of Botany and Microbiology, University of Oklahoma University of Oklahoma)首席教授( Presidential Professor)，所长(Director)

　　2006-今 美国 劳伦斯-伯克利国家实验室(Lawrence Berkeley National Laboratory)兼职高级研究员(Adjunct Senior Scientist)

　　2010年9月-今，中国清华大学环境学院教授、千人计划入选人。

　　研究领域

　　1.环境基因组学和功能基因组学

　　2.系统生物学和生物信息学

　　3.微生物生态学和群落生态学

　　奖励与荣誉

　　1996 Alexander Hollaender杰出博士后奖(Alexander Hollaender Distinguished Postdoctoral Fellow)(此奖项由美国能源部设立，是美国最具声望的博士后奖项)

　　1998橡树岭国家实验室杰出成果奖(Research Accomplishment Award)

　　1999 橡树岭国家实验室杰出成就奖(Superior Performance Award)

　　2001 美国能源部青年科学家奖 (DOE Office of Science’s 2001 Early Career Award for Scientists and Engineers

　　2001 美国青年科学家总统奖(Presidential Early Career Award for Scientists and Engineers from the President of the United State of America)(美国青年科学家最高荣誉)

　　2004 中国国家基金委海外杰青

　　2004 CCTV纪念邓小平诞辰100周年专门小组会谈海外中国科学家唯一代表

　　2006 俄克拉荷马大学首席教授(Presidential Professor)2005 联邦实验室联盟技术转化杰出奖(Federal Laboratory Consortium award for Excellence in Technology Transfer)

　　2009 环境功能基因芯片(Geochip)研发获全球百大创新技术研发奖(R&D 100 Award，2009年全球最具科学创新和技术突破，并且具有极高商业化前景的100项科技成果，研发杂志评选，有极高的国际影响力)

　　2009 建国60周年庆典海外特邀代表

　　2009 俄克拉荷马亚洲协会杰出亚裔美国人(Outstanding Asian American for the Asia Society of Oklahoma)

　　学术成果

　　出版著作：

　　Zhou, J.-Z., D.K. Thompson, Y. Xu, and James M. Tiedje. 2004. Microbial Functional Genomics. 624pp. John Wiley & Sons, Hoboken, New Jersey.

　　发表文章：

　　周集中博士发表论文400余篇，总引用次数超过17000次，H-index为70。2008-2014年部分代表性论著如下：

　　J. Zhou*, S. Kang*, C. Schadt, and C. Garten. 2008. Spatial Scaling of Functional Gene Diversity across Various Microbial Taxa. Proc. Nat. Acad. Sci, 105: 7768-7773

　　L. Wu, X. Liu, M. Fields, D. Thompson, C. Bagwell, J. Tiedje, T. Hazen, and J. Zhou*. 2008. Microarray-based whole-genome hybridization as a tool fordetermining prokaryotic species relatedness. ISME J. 2, 642–655.

　　P. Waldron, J. D.VanNostrand, D. Watson, Z. He, L. Wu, P. Jardine, T. Hazen, and J. Zhou*. 2009. GeoChip analysis of subsurface microbial communities impacted by heavy metal and nitrate contamination. Environ. Sci. Technol. 43: 3529-3534

　　Van Nostrand, J. D, W. Wu, L. Wu, Y. Deng, J. Carley, S. Carroll, Z. He, B. Gu, J. Luo, C. Criddle, P. Jardine, J. Tiedje, T. Hazen, J. Zhou*. 2009. GeoChip-based analysis of functional microbial communities in a bioreduced uranium-contaminated aquifer during reoxidation by oxygen. Environ. Microbiol. 11: 2611-2626.

　　H. Gao, Z. Yang, S. Barua, S. Reed, M. Romine, K. Nealson, J. Fredrickson,J. M. Tiedje, and J. Zhou*. 2009. Reduction of nitrate in Shewanella oneidensis dependson atypical NAP and NRF systems with NapB as a preferred electron transport proteinfrom CymA to NapA. ISME J. 3: 966-976.

　　W. Liu, A. Wang, S. Cheng, B. Logan, H. Yu, Y. Deng, J. van Nostrand, L. Wu, Z. He and J. Zhou*. 2010. Geochip-based functional gene analysis of anodophiliccommunities in microbial electrolysis cells under different operational modes. Environ. Sci.Technol. 44: 7729-7735.

　　Z. He, M. Xu, D. Ye, S. Kang, L. Kellogg, L. Wu, J. Van Nostrand, S. Hobbie, P. Reich, and J. Zhou*. 2010. Metagenomic analysis reveals a marked divergence in thestructure of belowground microbial communities at elevated CO2. Ecol. Lett. 13: 564-575.

　　W. Liu, A. Wang, S. Cheng, B. Logan, H. Yu, Y. Deng, J. van Nostrand, L. Wu, Z. He and J. Zhou*. 2010. Geochip-based functional gene analysis of anodophiliccommunities in microbial electrolysis cells under different operational modes. Environ. Sci.Technol. 44: 7729-7735.

　　J. Zhou*, Y. Deng*, F. Luo, Z. He, Q. Tu, and X. Zhi. 2010. Functional Molecular Ecological Networks. mBio 1(4):e00169-10

　　T. Hazen, J. Zhou, et al., 2010. Deep-sea oil plume enriches Indigenous oil-degrading bacteria. Science 330: 204-208.

　　J. Zhou*, Y. Deng, F. Luo, Z. He, and Y. Yang. 2011. Phylogenetic MolecularEcological Network of Soil Microbial Communities in Response to Elevated CO2. mBio, 294): doi:10.1128/mBio.00122-11.

　　J. Zhou*, L. Wu, Y. Deng, X. Zhi, Y. Jiang, Q. Tu, J. Xie, J. D. VanNostrand, Z. He, and Y. Yang. 2011. Reproducibility and Quantitation of Amplicon Sequencing-Based Detection. ISME J. 5:1303-1313.

　　J.Zhou*, Q. He, C. L. Hemme, A. Mukhopadhyay, K. Hillesland, A. Zhou, Z. He, J.D. Van Nostrand, T. C. Hazen, D. A. Stahl, J. D. Wall, and A. P. Arkin. 2011. How sulfate reducing microorganisms cope with stress: lessons from systems biology. Nature Review in Microbiology 9: 452-466.

　　Y.Liang, J.Van Nostrand, Y. Deng, Z. He, L. Wu, X. Zhang, G. Li and J. Zhou*. 2011. Functional gene diversity of soil microbial communities from oilcontaminatedfields in China. ISME J. 5: 403-413.

　　J. Zhou*, L. Wu, Y. Deng, X. Zhi, Y. Jiang, Q. Tu, J. Xie, J. D. Van Nostrand, Z. He, and Y. Yang. 2011. Reproducibility and Quantitation of Amplicon Sequencing-Based Detection. ISME J. 5:1303-1313.

　　J. Zhou*, K. Xue, J. Xie, Y. Deng, L. Wu, X. Cheng, S. Fei, S. Deng, Z. He, J. van Nostrand, and Y. Luo. 2012. Microbial Mediation of Carbon Cycle Feedbacks to Climate Warming. Nature Climate Change, 2:106-110.

　　Z. He, Y. Piceno, Y. Deng, M. Xu, Z. Lu, T. DeSantis, G. Andersen, S. E. Hobbie, P. B.Reich, and J. Zhou*. 2012. The phylogenetic composition and structure of soil microbial communities shifts in response to elevated carbon dioxide. ISME J, 6: 259-272.

　　Z. Lu, Y. Deng, J. D. Van Nostrand, Z. He, J. Voordeckers, A. Zhou, Y.-J. Lee, O.Mason, E. Dubinsky, K. Chavarria, L. Tom, J. Fortney, R. Lamendella, J. K. Jansson, P.D’haeseleer, T. Hazen, and J. Zhou*. 2012. Microbial gene functions enriched in the Deep water Horizon deep-sea oil plume. ISME J., 6: 451-460.

　　Y. Yang*, Y. Gao, Q. Lin, D. Xu, H. Yu, L. Wu, Y. Hu, X. Li, Z. He, Y. Deng, S. Wang and J. Zhou. 2013. The microbial gene diversity along an elevation gradient of the Tibetan grassland. The ISME journal, 8(2), 430-440.

　　Y. Yang,*, L. Wu, Q. Lin, M. Yuan, D. Xu, H. Yu, Y. Hu, J.C. Duan, X. Li, Z. He, K. Xue, S. Wang, and J. Zhou.2013. Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland, Global Change Biology, 19: 637–648.

　　J. Zhou*, Y. Jiang, Y. Deng, Z. Shi, B. Zhou, K. Xue, L. Wu, Z. He, and Y. Yang. 2013. Random Sampling Process Leads to Overestimation of β-Diversity of Microbial Communities. mBio 4: e00324-13 (doi:10.1128/mBio.00324-13)

　　J. Zhou*, W. Liu, Y. Deng, Y. Jiang, K. Xue, Z. He, J. D. Van Nostrand, L. Wu, Y. Yang, and A. Wang. 2013. Stochastic assembly leads to alternative communities with distinct functions. mBio, 4: e00584-12

　　Q. Tu, Z. He, Y. Deng, and J. Zhou*. 2013. Strain/Species-Specific Probe Design for Microbial Identification Microarrays. Applied and Environmental Microbiology. Xu, M., Z. He, Y. Deng, L. Wu, J.D. van Nostrand, S. E. Hobbie, P. B. Reich, and J.-.Z. Zhou. 2013. Elevated CO2 influences microbial carbon and nitrogen cycling. BMC microbiology, 13(1), 124.

　　D. Qiu, H. Wei, Q. Tu, Y. Yang, M. Xie, J. Chen, M. H. Pinkerton, Y. Liang, Z. He, and J. Zhou*. 2013. Combined genomics and experimental analyses of respiratory characteristics of Shewanella putrefaciens W3-18-1. Applied and environmental microbiology.

　　Y. Lee, J. D. van Nostrand, Q. Tu, Z. Lu, L. Cheng, T. Yuan, Y. Deng, M. Q. Carter, Z. He, L. Wu, F. Yang, J. Xu, and J. Zhou*. 2013. The PathoChip, a functional gene array for assessing pathogenic properties of diverse microbial communities. The ISME J., doi: 10.1038/ismej.2013.88.

　　Y. Chan, J. D. Van Nostrand3, J. Zhou, S. B. Pointing, and R. L. Farrell. 2013. Functional ecology of an Antarctic Dry Valleys landscape. Proc. Nat. Acad. Sci, 110: 8990-8995. doi: 10.1073/pnas.1300643110.

　　A. Zhou, E. Baidoo, Z. He, A. Mukhopadhyay, J. K. Baumohl, P. Benke, M. P. Joachimiak, M. Xie, R. Song, A. P. Arkin, T. C. Hazen, J. D Keasling, J. D. Wall, D. A. Stahl, and J. Zhou*. 2013. Characterization of NaCl-tolerance in Desulfovibrio vulagris Hildenborough through experimental evolution. The ISME J. doi: 10.1038/ismej.2013.60.

　　H. Jiang, Q. He, Z. He, C. L. Hemme, L. Wu, and J. Zhou*.2013. Continuous Cellulosic Bioethanol Fermentation by Cyclic Fed-Batch Co-Cultivation. Appl. Environ. Microbiol. 79: 1580-1589.

　　X. Li, Y. Deng, Q. Li, C. Lu, J. Wang, H. Zhang, J. Zhu, J. Zhou*, and Zhili He*. 2013. Shifts of functional gene representation in rhizosphere microbial communities under elevated ozone. The ISME J, 7: 660-71.

　　J. Zhou*, Y. Deng, P. Zhang, K. Xue, Y. Liang, JVD. Nostrand, Y. Yang, Z. He, L. Wu, D.A. Stahl, T. Hazen, J.M. Tiedje and A.P. Arkin (2014) Stochasticity, Succession and Environmental Perturbations in a Fluidic Ecosystem, PNAS, 201324044.

　　申请专利、注册软件：

　　美国专利 No. 7,759,057.Method for analyzing microbial communities.Zhou, J.-Z., L. Wu, and X. Liu. 2010.

文章来源：清华大学环境学院